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#bioinformatics

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flo<p><span>Linux System Administrator (m/f/d) in Bioinformatics Industry<br>Dresden <br><br>"Scionics Computer Innovation GmbH excels in offering cutting-edge consulting, services, and support tailored to academic institutions and scientific research organizations. We specialize in seamlessly integrating information technology with biology and the life sciences, serving as a vital conduit between IT and research. As a prominent member of the vibrant and globally connected Biopolis Dresden research campus, we actively collaborate with diverse life science companies and esteemed academic research institutions.<br>Currently, we are looking to expand our service team in Dresden, Germany, and are seeking a highly skilled Linux System Administrator to join us on a full-time basis and onsite." <br><br></span><a href="https://www.empfehlungsbund.de/jobs/276849/linux-system-administrator-m-strich-f-strich-d-in-bioinformatics-industry" rel="nofollow noopener noreferrer" target="_blank">www.empfehlungsbund.de/jobs/276849/linux-system-administrator-m-strich-f-strich-d-in-bioinformatics-industry</a><span> <br><br></span><a href="https://iceshrimp.de/tags/Scionics" rel="nofollow noopener noreferrer" target="_blank">#Scionics</a><span> </span><a href="https://iceshrimp.de/tags/Linux" rel="nofollow noopener noreferrer" target="_blank">#Linux</a><span> </span><a href="https://iceshrimp.de/tags/SystemAdministration" rel="nofollow noopener noreferrer" target="_blank">#SystemAdministration</a><span> </span><a href="https://iceshrimp.de/tags/SysAdmin" rel="nofollow noopener noreferrer" target="_blank">#SysAdmin</a><span> </span><a href="https://iceshrimp.de/tags/Bioinformatics" rel="nofollow noopener noreferrer" target="_blank">#Bioinformatics</a><span> </span><a href="https://iceshrimp.de/tags/Job" rel="nofollow noopener noreferrer" target="_blank">#Job</a><span> </span><a href="https://iceshrimp.de/tags/Jobs" rel="nofollow noopener noreferrer" target="_blank">#Jobs</a><span> </span><a href="https://iceshrimp.de/tags/FedHire" rel="nofollow noopener noreferrer" target="_blank">#FedHire</a><span> </span><a href="https://iceshrimp.de/tags/SiliconSaxony" rel="nofollow noopener noreferrer" target="_blank">#SiliconSaxony</a><span> </span><a href="https://iceshrimp.de/tags/Dresden" rel="nofollow noopener noreferrer" target="_blank">#Dresden</a></p>
Eugene F. Baulin<p>Couldn’t wait to share - SQUARNA 2.0 is here, with greatly improved performance in single-sequence RNA secondary structure prediction!</p><p><a href="https://github.com/febos/SQUARNA" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">github.com/febos/SQUARNA</span><span class="invisible"></span></a></p><p>Updated preprint is coming soon :)</p><p><a href="https://mastodon.social/tags/SQUARNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SQUARNA</span></a> <a href="https://mastodon.social/tags/RNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RNA</span></a> <a href="https://mastodon.social/tags/2D" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>2D</span></a> <a href="https://mastodon.social/tags/Structure" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Structure</span></a> <a href="https://mastodon.social/tags/Prediction" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Prediction</span></a> <a href="https://mastodon.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioinformatics</span></a> <a href="https://mastodon.social/tags/Research" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Research</span></a> <a href="https://mastodon.social/tags/Pseudoknot" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Pseudoknot</span></a></p>
Bioconductor<p>⏳ Time’s running out! Submit your abstract for <a href="https://genomic.social/tags/EuroBioC2025" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>EuroBioC2025</span></a> by 24 April.<br>Join us this Sept in Barcelona to share your research, meet the <a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioconductor</span></a> community &amp; explore all things <a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioinformatics</span></a> + <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RStats</span></a>.</p><p>👉 <a href="https://eurobioc2025.bioconductor.org/pages/submissions.html" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">eurobioc2025.bioconductor.org/</span><span class="invisible">pages/submissions.html</span></a></p>
naturepoker<p>I'm curious, is anyone else seeing (rare) occasional reads duplication when converting dorado basecalled BAMs to fastq via bedtools? </p><p><a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
Arli A P<p>Menghadiri seminar hasil an. Hotma Hutapea di prodi S3 Epidemiologi FKM University of Indonesia dengan topik penelitian mengenai long COVID. Berfoto dengan Prof Mako, Dekan FKM UI, dengan jajarannya. Juga ada prof Sunarno , dari BRIN &amp; Pak Adi Yulandi dari Universitas Atmajaya Jakarta😊<br>Sebagai ko-promotor, saya sangat puas dengan upaya Bu Hotma untuk mengintegrasikan Epidemiologi dengan Biologi molekuler dan Bioinformatika. 🙏<br><a href="https://sciencemastodon.com/tags/COVID19" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>COVID19</span></a> <a href="https://sciencemastodon.com/tags/epidemiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>epidemiology</span></a> <a href="https://sciencemastodon.com/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://sciencemastodon.com/tags/biomedicine" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>biomedicine</span></a></p>
WikiPathways<p>upcoming online workshop, 2x 2 hours, by the ERDERA project, on Rare Disease Maps, May 6 and 7 from 3-5pm CEST: "Rare Disease Maps"</p><p>Day 1: <a href="https://events.teams.microsoft.com/event/009dccd2-5c8f-465e-ad28-15056854f2e4@b89cc6a7-57a7-4137-8224-69e7ea0b1c55" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">events.teams.microsoft.com/eve</span><span class="invisible">nt/009dccd2-5c8f-465e-ad28-15056854f2e4@b89cc6a7-57a7-4137-8224-69e7ea0b1c55</span></a></p><p>Day 2: <a href="https://events.teams.microsoft.com/event/8369a87a-64b3-4822-b2c5-c3cb3ea9a7c7@b89cc6a7-57a7-4137-8224-69e7ea0b1c55" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">events.teams.microsoft.com/eve</span><span class="invisible">nt/8369a87a-64b3-4822-b2c5-c3cb3ea9a7c7@b89cc6a7-57a7-4137-8224-69e7ea0b1c55</span></a></p><p><a href="https://fosstodon.org/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://fosstodon.org/tags/RareDisease" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RareDisease</span></a></p>
UK<p><a href="https://www.europesays.com/uk/35649/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">europesays.com/uk/35649/</span><span class="invisible"></span></a> Making cell therapy accessible: challenges and opportunities <a href="https://pubeurope.com/tags/Agriculture" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Agriculture</span></a> <a href="https://pubeurope.com/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioinformatics</span></a> <a href="https://pubeurope.com/tags/BiomedicalEngineering" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>BiomedicalEngineering</span></a>/Biotechnology <a href="https://pubeurope.com/tags/Biomedicine" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Biomedicine</span></a> <a href="https://pubeurope.com/tags/biotechnology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>biotechnology</span></a> <a href="https://pubeurope.com/tags/general" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>general</span></a> <a href="https://pubeurope.com/tags/Health" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Health</span></a> <a href="https://pubeurope.com/tags/Healthcare" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Healthcare</span></a> <a href="https://pubeurope.com/tags/LifeSciences" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>LifeSciences</span></a> <a href="https://pubeurope.com/tags/UK" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>UK</span></a> <a href="https://pubeurope.com/tags/UnitedKingdom" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>UnitedKingdom</span></a></p>
Pierre Lindenbaum<p>Heng Li's bliog: Short RNA-seq read alignment with minimap2 <a href="https://lh3.github.io/2025/04/18/short-rna-seq-read-alignment-with-minimap2" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">lh3.github.io/2025/04/18/short</span><span class="invisible">-rna-seq-read-alignment-with-minimap2</span></a><br> </p><p>"TL;DR: the new preset splice:sr in minimap2 can align short RNA-seq reads. It is similar to STAR in resource usage, approaches STAR in junction accuracy, and is overall better at SNP calling."</p><p><a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/rnaseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rnaseq</span></a> <a href="https://genomic.social/tags/alignment" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>alignment</span></a> <a href="https://genomic.social/tags/ngs" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ngs</span></a> <a href="https://genomic.social/tags/mapping" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>mapping</span></a></p>
UK<p><a href="https://www.europesays.com/uk/29907/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">europesays.com/uk/29907/</span><span class="invisible"></span></a> Vascular Ehlers Danlos Syndrome and Chromosome 2q32 Microdeletion Syndrome <a href="https://pubeurope.com/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioinformatics</span></a> <a href="https://pubeurope.com/tags/Biomedicine" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Biomedicine</span></a> <a href="https://pubeurope.com/tags/ChromosomeAbnormality" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ChromosomeAbnormality</span></a> <a href="https://pubeurope.com/tags/Cytogenetics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Cytogenetics</span></a> <a href="https://pubeurope.com/tags/GeneExpression" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>GeneExpression</span></a> <a href="https://pubeurope.com/tags/general" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>general</span></a> <a href="https://pubeurope.com/tags/GeneticTesting" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>GeneticTesting</span></a> <a href="https://pubeurope.com/tags/Genetics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Genetics</span></a> <a href="https://pubeurope.com/tags/HumanGenetics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>HumanGenetics</span></a> <a href="https://pubeurope.com/tags/Science" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Science</span></a> <a href="https://pubeurope.com/tags/UK" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>UK</span></a> <a href="https://pubeurope.com/tags/UnitedKingdom" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>UnitedKingdom</span></a></p>
Luke Pembleton<p>Ahhh all I want for my team is MacBooks for local bioinformatics dev and some local Linux server compute power. Seems to be a never ending back and forth with IT… The challenge is bioinformatics is very different to the often assumed traditional data science or software dev… 😮‍💨<br><a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
Peter Cock<p>Abstract submitted with hours to spare - fingers crossed for <a href="https://fediscience.org/tags/BOSC2025" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>BOSC2025</span></a> / <a href="https://fediscience.org/tags/ISMB2025" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ISMB2025</span></a> / <a href="https://fediscience.org/tags/ECCB2025" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ECCB2025</span></a> and plenty of interesting <a href="https://fediscience.org/tags/OpenSource" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OpenSource</span></a> <a href="https://fediscience.org/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioinformatics</span></a> presentations! ⏳</p><p><a href="https://www.open-bio.org/events/bosc-2025/submit/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">open-bio.org/events/bosc-2025/</span><span class="invisible">submit/</span></a></p>
Luke Pembleton<p>Anyone have any experience using <a href="https://genomic.social/tags/AWS" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>AWS</span></a> workspaces or VNC as a <a href="https://genomic.social/tags/rstats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rstats</span></a> or <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> dev environment. I much prefer the idea of keeping dev on a local laptop and avoiding potential latency issues, keeping a single file system, and the ability to work on the go even without internet, but would be interested to hear others experiences.</p>
Pierre Lindenbaum<p><a href="https://genomic.social/tags/job" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>job</span></a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/Paris" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Paris</span></a> <a href="https://genomic.social/tags/France" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>France</span></a> <a href="https://genomic.social/tags/emploi" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>emploi</span></a> "Ingénieur en bioinformatique " <a href="https://inovarion-1670250444.teamtailor.com/jobs/5664820-ingenieur-en-bioinformatique" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">inovarion-1670250444.teamtailo</span><span class="invisible">r.com/jobs/5664820-ingenieur-en-bioinformatique</span></a></p>
devSJR :python: :rstats:<p>Some time ago <span class="h-card" translate="no"><a href="https://mastodon.social/@devTLB" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>devTLB</span></a></span> and I announced that we work on a review about <a href="https://fosstodon.org/tags/rstats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rstats</span></a> packages for <a href="https://fosstodon.org/tags/bioimage" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioimage</span></a> informatics. We think it is fairly complete now.</p><p>We would be happy to get some feedback before we submit it.</p><p>Here is the link to the draft:</p><p>[Update: Copy on Codeberg]<br><a href="https://codeberg.org/devSJR/Bioimage/src/branch/main/RImageReview.pdf" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">codeberg.org/devSJR/Bioimage/s</span><span class="invisible">rc/branch/main/RImageReview.pdf</span></a></p><p><a href="https://fosstodon.org/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioinformatics</span></a></p>
NMR Online Limited<p>&gt;&gt; ...</p><p>NMR Online - ELEMENTS: The FREE web NMR spectroscopy software suite</p><p>■ v1.00 // REUBEN</p><p>-- [coming soon]</p><p>Even though we've taken a break from <a href="https://mstdn.science/tags/NMRchat" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NMRchat</span></a>, we've not stopped making connections and engineering our free <a href="https://mstdn.science/tags/NMR" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NMR</span></a> software suite.</p><p>! More news soon.</p><p>_ end transmission //</p><p>&gt;&gt; ...</p><p><a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://mstdn.science/tags/biology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>biology</span></a> <a href="https://mstdn.science/tags/biochemistry" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>biochemistry</span></a> <a href="https://mstdn.science/tags/biophysics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>biophysics</span></a> <a href="https://mstdn.science/tags/chemistry" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>chemistry</span></a> <a href="https://mstdn.science/tags/CompChem" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>CompChem</span></a> <a href="https://mstdn.science/tags/metabolomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metabolomics</span></a> <a href="https://mstdn.science/tags/NMROnline" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NMROnline</span></a> <a href="https://mstdn.science/tags/physics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>physics</span></a> <a href="https://mstdn.science/tags/spectroscopy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>spectroscopy</span></a> <a href="https://mstdn.science/tags/StructuralBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>StructuralBiology</span></a></p>
nf-core<p>Pipeline release! nf-core/hlatyping v2.1.0 - 2.1.0 - Chewbacca!</p><p>Please see the changelog: <a href="https://github.com/nf-core/hlatyping/releases/tag/2.1.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/hlatyping/r</span><span class="invisible">eleases/tag/2.1.0</span></a></p><p><a href="https://mstdn.science/tags/dna" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>dna</span></a> <a href="https://mstdn.science/tags/hla" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>hla</span></a> <a href="https://mstdn.science/tags/hlatyping" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>hlatyping</span></a> <a href="https://mstdn.science/tags/immunology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>immunology</span></a> <a href="https://mstdn.science/tags/optitype" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>optitype</span></a> <a href="https://mstdn.science/tags/personalizedmedicine" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>personalizedmedicine</span></a> <a href="https://mstdn.science/tags/rna" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rna</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
naturepoker<p>Finished sequencing &amp; assembling new strain of a Haloarchea - here's ANI comparison plot to another genome ostensibly belonging to the same species. Difference between the two is about 10%. This pattern repeats through the genus.</p><p>Upcoming poster &amp; preprint might be a bit spicy.</p><p><a href="https://genomic.social/tags/microbiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>microbiology</span></a> <a href="https://genomic.social/tags/archaea" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>archaea</span></a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
Mark Ziemann 🇺🇦<p>🔬 𝗛𝗲𝗹𝗽 𝗜𝗺𝗽𝗿𝗼𝘃𝗲 𝘁𝗵𝗲 𝗥𝗲𝗽𝗿𝗼𝗱𝘂𝗰𝗶𝗯𝗶𝗹𝗶𝘁𝘆 𝗼𝗳 𝗕𝗶𝗼𝗶𝗻𝗳𝗼𝗿𝗺𝗮𝘁𝗶𝗰𝘀 𝗧𝗼𝗼𝗹𝘀 𝗶𝗻 𝗕𝗶𝗼𝗺𝗲𝗱𝗶𝗰𝗮𝗹 𝗦𝗰𝗶𝗲𝗻𝗰𝗲𝘀 + 𝗪𝗶𝗻 𝗮 𝗩𝗼𝘂𝗰𝗵𝗲𝗿! 🎟️</p><p>My wonderful PhD student (not on fedi) is runnning a survey about researcher views about pathway enrichment analysis.</p><p>If you are a life scientist who has ever done a pathway analysis this survey is for you. </p><p>Survey Link🔗 [<a href="https://lnkd.in/gHNMSD89" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">lnkd.in/gHNMSD89</span><span class="invisible"></span></a>]</p><p>📊 Deakin University ethics approval (ref:2024/HE000066). </p><p>First 150 participants get a $10 AUD gift voucher.</p><p><a href="https://genomic.social/tags/Genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Genomics</span></a> <a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioinformatics</span></a> <a href="https://genomic.social/tags/Biology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Biology</span></a></p>
naturepoker<p>Question for <a href="https://genomic.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nanopore</span></a> folks. I'm comparing collaborator's BAM vs mine, generated from same pod5. It looks like the collaborator's BAM has an extra qs: tag missing in mine. </p><p>Why would there be a difference? One would think default pod5 commands would record same tags for all output BAM? </p><p><a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
CSBJ<p>🧬 Ready for AI to crack the RNA-disease code?</p><p>🔗 GL4SDA: Predicting snoRNA-disease associations using GNNs and LLM embeddings. Computational and Structural Biotechnology Journal, DOI: <a href="https://doi.org/10.1016/j.csbj.2025.03.014" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">doi.org/10.1016/j.csbj.2025.03</span><span class="invisible">.014</span></a></p><p>📚 CSBJ: <a href="https://www.csbj.org/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">csbj.org/</span><span class="invisible"></span></a></p><p><a href="https://mastodon.social/tags/AIinBiomedicine" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>AIinBiomedicine</span></a> <a href="https://mastodon.social/tags/GraphNeuralNetworks" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>GraphNeuralNetworks</span></a> <a href="https://mastodon.social/tags/LLM" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>LLM</span></a> <a href="https://mastodon.social/tags/ncRNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ncRNA</span></a> <a href="https://mastodon.social/tags/snoRNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>snoRNA</span></a> <a href="https://mastodon.social/tags/CancerResearch" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>CancerResearch</span></a> <a href="https://mastodon.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioinformatics</span></a> <a href="https://mastodon.social/tags/PrecisionMedicine" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PrecisionMedicine</span></a> <a href="https://mastodon.social/tags/XAI" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>XAI</span></a> <a href="https://mastodon.social/tags/Genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Genomics</span></a></p>