Bioconductor<p>⏳ Time’s running out! Submit your abstract for <a href="https://genomic.social/tags/EuroBioC2025" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>EuroBioC2025</span></a> by 24 April.<br>Join us this Sept in Barcelona to share your research, meet the <a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioconductor</span></a> community & explore all things <a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioinformatics</span></a> + <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RStats</span></a>.</p><p>👉 <a href="https://eurobioc2025.bioconductor.org/pages/submissions.html" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">eurobioc2025.bioconductor.org/</span><span class="invisible">pages/submissions.html</span></a></p>
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GBCC2025 Training Topics 
GBCC2025 is coming soon! We want to hear from you:
- Topics you're interested in learning about
- Interest in leading a session
Fill out the form by March 21st to help shape our training schedule!
https://forms.gle/i34Ag8SHMtBAmpPh7
Thanks! 
For more information about the Galaxy Bioconductor Community Conference (June 23 - 26, 2025), see the GBCC2025 website: https://gbcc2025.org
Google DocsExpression of interest for GBCC2025 training topicsGBCC2025 is coming up soon and we'd like to hear from you! This year, we're doing things a little differently with our joint conference between Galaxy and Bioconductor. There will be 10 training sessions, each lasting 1.5 hours.
Please fill out this form to:
Indicate the topics you are interested in learning about at GBCC this year.
Express your interest in leading a training session (optional).
Note: This year, there are no abstract submissions for package demos or workshops, only talks and posters. If you want to lead a training session, please use this form. If you're interested in giving a talk or presenting a poster, please submit through the conference abstract submission page.
Fill out this form by Friday, March 21st, so that we can create a training schedule that better serves all of us in the Galaxy and Bioconductor community.
Thank you for your input!
The GBCC2025 Organizing Committee
GBCC2025 Training Topics
GBCC2025 is coming soon! We want to hear from you:
- Topics you're interested in learning about
- Interest in leading a session
Fill out the form by March 21st to help shape our training schedule!
Thanks!
Google DocsExpression of interest for GBCC2025 training topicsGBCC2025 is coming up soon and we'd like to hear from you! This year, we're doing things a little differently with our joint conference between Galaxy and Bioconductor. There will be 10 training sessions, each lasting 1.5 hours.
Please fill out this form to:
Indicate the topics you are interested in learning about at GBCC this year.
Express your interest in leading a training session (optional).
Note: This year, there are no abstract submissions for package demos or workshops, only talks and posters. If you want to lead a training session, please use this form. If you're interested in giving a talk or presenting a poster, please submit through the conference abstract submission page.
Fill out this form by Friday, March 21st, so that we can create a training schedule that better serves all of us in the Galaxy and Bioconductor community.
Thank you for your input!
The GBCC2025 Organizing Committee
New Bioconductor Blog Post on CAB and its new co-chair!
Stevie Pederson introduces themselves and shares insights about the Community Advisory Board (CAB).
Check it out here: https://buff.ly/EZWEg0A
Bioconductor community blogBioconductor Community Advisory Board – Bioconductor community blogAn introduction to the new Co-Chair
The tidyomics group's next meeting is on Wednesday, March 12th at 4 PM NY / 9 PM London / 8 AM (Thursday) Melbourne. They'll discuss enhancing the SummarizedExperiment display and seek feedback on the tidyprint package. Check Bioconductor Slack #tidiness-in-bioc channel or Bioconductor events page calendar for more info: https://buff.ly/rdhL3jL
buff.lyBioconductor - EventsThe Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and data scientists.
New Bioconductor blog post on mentoring in Outreachy!
Svetlana Ugarcina Perovic shares her experiences with the Microbiome Study Curation project and open science. Check it out here: https://buff.ly/43aPLAc
Interested in mentoring? Submit a project by March 7, 2025, 4 PM UTC at #Outreachy: https://buff.ly/3wzLxne
Thanks Svetlana!
Bioconductor community blogOpen Science Mentoring: My Journey with Outreachy Mentees – Bioconductor community blogA blog for the Bioconductor community!
Desperate bioinformatician looking for a function to calculate coverage based on a list of intervals. Something like summarising genomicranges to coverage values. Do you know something like that?
UPDATE: `GenomicRanges::coverage` is a good candidate.
GBCC2025 Abstracts & Registration Now Open!
Submit your abstract or register to join the first-ever Galaxy & Bioconductor Community Conference, June 23-26, 2025, at Cold Spring Harbor Laboratory, NY.
Abstract Deadline: April 1, 2025 Register/Submit: https://gbcc2025.org
gbcc2025.orgGBCC2025
New Bioconductor blog post on the SpatialData hackathon and workshop held in November in Switzerland, organized by scverse with Bioconductor participation. Check it out here: https://buff.ly/4fM1qrH
Thanks, Artür Manukyan!
Bioconductor community blog2024 SpatialData Workshop – Bioconductor community blogR/Bioconductor developers participating in the 1st scverse SpatialData Workshop
Exciting news! Join us for a Bioconductor workshop in Nairobi, Kenya, from March 24–28, 2025! This week-long, in-person course will cover genomic data analysis and RNA-seq workflows using R/Bioconductor. Led by local and international experts, it’s a great opportunity to build practical bioinformatics skills.
Dates: March 24–28, 2025
Location: Nairobi, Kenya
Learn more and sign up for updates: https://training.bioconductor.org/workshops/2025-03-Nairobi/
training.bioconductor.orgindexJoin us for a comprehensive week-long Bioconductor in-person course covering genomic data analysis and RNA-seq using R and Bioconductor.
Bioconductor 3.20 is released! 
Thanks to all developers and community members for contributing to the project! 
See the full release announcement: https://buff.ly/48vmf8J
buff.lyBioconductor - Bioconductor 3.20 ReleasedThe Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and data scientists.
My very first #Bioconductor package is now in the devel release
https://bioconductor.org/packages/DFplyr
This package brings {dplyr} verbs to S4 DataFrames ({S4Vectors}) so no need to detour your data through a tibble to slice, dice, and transform it. This also means that S4 columns (e.g. GRanges, NumericList, ...) are supported.
BioconductorDFplyr (development version)Provides `dplyr` verbs (`mutate`, `select`, `filter`, etc...) supporting `S4Vectors::DataFrame` objects. Importantly, this is achieved without conversion to an intermediate `tibble`. Adds grouping infrastructure to `DataFrame` which is respected by the transformation verbs.